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Scilab   http://www.scilab.org/  [ Edit ]  Site Reviews(0) ...Scilab is a scientific software package for numerical computations providing a powerful open computing environment for engineering and scientific applications. ... Added: Aug 20, 2005  Last Update: Aug 20, 2005  Category: Data Analysis/ Maths Tools  Hits In: 0  Hits Out: 653

The Blueprint Initiative   http://www.blueprint.org/  [ Edit ]  Site Reviews(0) ...The Blueprint Initiative was established in 1999 as a resource for biomolecular data. Through public databases and other software, Blueprint collects and distributes information to everyone with an internet connection. ... Added: Aug 20, 2005  Last Update: Aug 20, 2005  Category: Web Portals  Hits In: 0  Hits Out: 506

Bioconductor   http://www.bioconductor.org/  [ Edit ]  Site Reviews(0) ...BioConductor is an open source and open development software project for the analysis and comprehension of genomic data.... Added: Aug 20, 2005  Last Update: Aug 20, 2005  Category: Bioinformatics / Sequence Tools  Hits In: 0  Hits Out: 533

YALE - Yet Another Machine Learning Environment   http://www-ai.cs.uni-dortmund.de/SOFTWARE/YALE/index.html  [ Edit ]  Site Reviews(1) ...YALE is an environment for machine learning experiments and data mining. Experiments can be made up of a large number of arbitrarily nestable operators and their setup is described by XML files which can easily be created with a graphical user interface. Applications of YALE cover both research and real-world data mining tasks.... Added: Aug 20, 2005  Last Update: Aug 20, 2005  Category: Machine Learning / Neural Networ  Hits In: 0  Hits Out: 525

Anti-HIV / OI Compound Database   http://apps1.niaid.nih.gov/struct_search/default.html  [ Edit ]  Site Reviews(0) ...The database contains < 114,500 compounds which have been tested HIV, HIV Enzymes or opportunists pathogens. All compounds are linked to assay data.... Added: Aug 20, 2005  Last Update: Aug 20, 2005  Category: Databases - Small Molecules  Hits In: 0  Hits Out: 773

DrugBank   http://redpoll.pharmacy.ualberta.ca/drugbank/  [ Edit ]  Site Reviews(0) ...The DrugBank database is a unique bioinformatics and cheminformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, pathway) information. The database contains nearly 4100 drug entries including >700 FDA-approved small molecule drugs, 110 FDA-approved biotech (protein/peptide) drugs, >100 nutraceuticals and >3200 experimental drugs. Additionally, more than 15,000 protein (i.e. drug target) sequences are linked to these drug entries. Each DrugCard entry contains more than 80 data fields with half of the information being devoted to drug/chemical data and the other half devoted to drug target or protein data. ... Added: Aug 20, 2005  Last Update: Aug 20, 2005  Category: Databases - Ligands+Targets  Hits In: 0  Hits Out: 1051

gpDB: G-proteins and their interaction with GPCRs   http://bioinformatics2.biol.uoa.gr/gpDB/index.jsp  [ Edit ]  Site Reviews(0) ...GpDB is a publicly accessible, relational database of G-proteins and their interactions with GPCRs . The sequences are classified according to a hierarchy of different classes, families and sub-families, based on extensive literature search. The main innovation besides the classification of both G-proteins and GPCRs is the relational model of the database, describing the known coupling specificity of the GPCRs to their respective alpha subunit of G-proteins, a unique feature not available in any other database.... Added: Aug 20, 2005  Last Update: Aug 20, 2005  Category: Databases - Proteins/Macromol.  Hits In: 0  Hits Out: 529

PDBSum   http://www.ebi.ac.uk/thornton-srv/databases/pdbsum/  [ Edit ]  Site Reviews(0) ...PDBsum is a pictorial database providing an at-a-glance overview of every macromolecular structure deposited in the Protein Data Bank (PDB). It provides schematic diagrams of the molecules in each structure and of the interactions between them. Entries are accessed by their PDB code, by simple text search, or can bw browsed. ... Added: Aug 20, 2005  Last Update: Aug 20, 2005  Category: Databases - Proteins/Macromol.  Hits In: 0  Hits Out: 745

Prosthetic groups and Metal Ions in Protein Active Sites Database   http://metallo.scripps.edu/PROMISE/  [ Edit ]  Site Reviews(0) ...The Prosthetic groups and Metal Ions in Protein Active Sites Database Version 2.0... Added: Aug 20, 2005  Last Update: Aug 20, 2005  Category: Databases - Proteins/Macromol.  Hits In: 0  Hits Out: 517

Surface Properties of INterfaces - Protein Protein Interfaces   http://trantor.bioc.columbia.edu/cgi-bin/SPIN/  [ Edit ]  Site Reviews(0) ...SPIN-PP is a database of all protein-protein interfaces present in the PDB. The program GRASP was used to create molecular surfaces of each half of all 2-chain complexes present in the PDB. A basic set of physico-chemical properties were then mapped on to these surfaces, which were then used to classify the interfaces into a surface property taxonomy. ... Added: Aug 20, 2005  Last Update: Aug 20, 2005  Category: Databases - Proteins/Macromol.  Hits In: 0  Hits Out: 505

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