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AMMP   http://www.cs.gsu.edu/~cscrwh/ammp/ammp.html  [ Edit ]  Site Reviews(0) ...... Added: Nov 9, 2003  Last Update: Nov 9, 2003  Category: Semiempirical methods / MM / MD  Hits In: 0  Hits Out: 1370

GROMACS   http://www.gromacs.org  [ Edit ]  Site Reviews(0) ...GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non-biological systems, e.g. polymers. ... Added: Nov 9, 2003  Last Update: Nov 9, 2003  Category: Semiempirical methods / MM / MD  Hits In: 0  Hits Out: 870

nMOLDYN   http://dirac.cnrs-orleans.fr/nMOLDYN/  [ Edit ]  Site Reviews(1) ...... Added: Nov 9, 2003  Last Update: Nov 9, 2003  Category: Semiempirical methods / MM / MD  Hits In: 0  Hits Out: 964

TINKER   http://dasher.wustl.edu/tinker/  [ Edit ]  Site Reviews(0) ...... Added: Nov 9, 2003  Last Update: Nov 9, 2003  Category: Semiempirical methods / MM / MD  Hits In: 0  Hits Out: 933

WinMopac   http://members.fortunecity.com/winmopac/  [ Edit ]  Site Reviews(0) ...... Added: Nov 9, 2003  Last Update: Nov 9, 2003  Category: Semiempirical methods / MM / MD  Hits In: 0  Hits Out: 905

MOIL   http://cbsu.tc.cornell.edu/software/moil/  [ Edit ]  Site Reviews(0) ...MOIL is a molecular dynamics package that performs energy related calculations. In addition to the common applications of energy, minimization, dynamics, and free energy differences of biological molecules, MOIL has a number of unique features developed in the group of Ron Elber.... Added: Nov 9, 2003  Last Update: Nov 9, 2003  Category: Semiempirical methods / MM / MD  Hits In: 0  Hits Out: 849

YASARA   http://www.yasara.org/  [ Edit ]  Site Reviews(0) ... YASARA is a molecular graphics, -modeling and -simulation program for Linux and Windows with a focus on biomolecules. ... Added: Nov 11, 2003  Last Update: Nov 11, 2003  Category: Semiempirical methods / MM / MD  Hits In: 0  Hits Out: 893

AmberFFC   http://www.u-picardie.fr/labo/lbpd/AmberFFC/  [ Edit ]  Site Reviews(0) ...AmberFFC, A Flexible Program to Convert AMBER and GLYCAM Force Fields for use with Commercial Molecular Modeling Packages... Added: Nov 25, 2003  Last Update: Nov 25, 2003  Category: Semiempirical methods / MM / MD  Hits In: 0  Hits Out: 915

EGO   http://www.lrz-muenchen.de/~heller/ego/index.html  [ Edit ]  Site Reviews(0) ...EGO: A Parallel Program for Molecular Dynamics Simulations of Biomolecules... Added: Nov 25, 2003  Last Update: Nov 25, 2003  Category: Semiempirical methods / MM / MD  Hits In: 0  Hits Out: 841

HOLE   http://www.biochemistry.bham.ac.uk/osmart/hole/  [ Edit ]  Site Reviews(0) ...A Program for the Analysis of the Pore Dimensions of Ion Channel Structural Models... Added: Nov 25, 2003  Last Update: Nov 25, 2003  Category: Semiempirical methods / MM / MD  Hits In: 0  Hits Out: 681

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